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BinderVerse

Dry-lab Design to Wet-lab Data in 3 Calendar Days

Rapid progress in computational protein design, especially de novo binder design, has unleashed the interest in binders for many purposes from in vivo biosensors, to signal transducers to therapeutics. However, a huge gap exists between computer generation of candidate sequences and obtaining functional, experimental data of the designs. State-of-the-art services takes several weeks to complete this. We shrink this time to under 3 calendar days!

Four Expression Systems To Suit Your Design Purpose

Workflow CF001

Expression SystemCell-freeBinder PurificationNoneAssayBLIImmobilizedBinderBlazing Fast!

Overview
[Expression System]Cell-free[Binder Purification]None[Assay]BLI[Immobilized]Binder
Sensing format

Fastest sequence-to-function service in the world! Binders are expressed in vitro from a linear DNA template, so there is no cloning and no cell culture. The crude reaction is captured directly on the probe and titrated against the target in solution, and the amount captured is measured on the same instrument immediately before the assay. Because the binder is used without purification, a design that expresses poorly can still be ranked.

Best for
Ranking many computational designs quickly; expression level unknown
Turnaround
Start from 3 days*
Cost (low volume)
$104/binder
Cost (high volume)
$92/binder
Min order size
16 binders
Max order size
768 binders
Additional services
Ship DNA to customer
by order volume, add-on services & more
Workflow CF002

Expression SystemCell-freeBinder PurificationStrep-Tactin XTAssayBLIImmobilizedTargetMonovalent Binding

Overview
[Expression System]Cell-free[Binder Purification]Strep-Tactin XT[Assay]BLI[Immobilized]Target
Sensing format

Don't get fooled by bivalent binding. Commercial targets are commonly supplied as Fc-fusions or other bivalent constructs. When the binder is held on the probe and a bivalent target flows over it, both arms of the target can engage at once, and the avidity contribution makes the measured affinity appear tighter than the intrinsic 1:1 value. This workflow reverses the geometry: the target is immobilized and the purified binder is the analyte, at a concentration measured on the assay instrument, so every interaction is monovalent and the reported KD is the intrinsic affinity.

Best for
Fc-fusion or otherwise bivalent targets, where avidity would flatter the affinity
Turnaround
Start from 3 days*
Cost (low volume)
$103/binder
Cost (high volume)
$84/binder
Min order size
16 binders
Max order size
768 binders
Additional services
Thermostability
Ship DNA to customer
by order volume, add-on services & more
Workflow CF003

Expression SystemCell-freeBinder PurificationTwinStrep-HisAssayBLIImmobilizedBinder

Overview
[Expression System]Cell-free[Binder Purification]TwinStrep-His[Assay]BLI[Immobilized]Binder
Sensing format

Cell-free expression straight from synthesised DNA — no cloning, no cells to grow. The binder is purified on both its Twin-Strep and His handles, captured on a Strep-Tactin XT probe, and titrated against the target in solution. Concentration is measured on the same instrument that runs the assay.

Best for
Binder-on-probe kinetics from synthesised DNA, without cloning
Turnaround
Start from 3.5 days*
Cost (low volume)
$116/binder
Cost (high volume)
$102/binder
Min order size
16 binders
Max order size
768 binders
Additional services
Thermostability
Ship DNA to customer
by order volume, add-on services & more
Workflow CF004

Expression SystemCell-freeBinder PurificationStrep-Tactin XTAssayProtein Characterization

Cell-free expression straight from synthesised DNA — no cloning, no cells to grow. Every run comes back with a gel of the crude reaction; add purification and you can also have a melting temperature, an SEC trace and a concentration. Nothing is measured against a target, so what you get back is whether the design expressed, how much of it there is, and whether it holds together.

Best for
Evaluating protein properties such as expression level, thermo stability, aggregation propensity.
Turnaround
Start from 3.5 days*
Cost (low volume)
$64/binder
Cost (high volume)
$57/binder
Min order size
16 binders
Max order size
768 binders
Additional services
Thermostability
SDS-PAGE Characterization
BLI-based Quantification (Crude)
BLI-based Quantification (Purified)
Affinity Purification (Small Scale)
Ship DNA to customer
by order volume, add-on services & more
Workflow MAB001

Expression SystemCHO/293TBinder FormatFull-length AbBinder PurificationNoneAssayBLIImmobilizedBinder

Overview
[Expression System]CHO/293T[Binder Format]Full-length Ab[Binder Purification]None[Assay]BLI[Immobilized]Binder
Sensing format

The binder is expressed as a full-length antibody in mammalian cells and used without purification: the crude supernatant is captured on the probe and titrated against the target in solution. Expression level therefore does not have to be high, or even known. This is the shortest of the mammalian routes and the least expensive per design, because nothing is purified and nothing is shipped. Culture scale is chosen under Protocol customization.

Best for
A first affinity ranking of many full-length antibodies, at the lowest cost per design
Turnaround
Start from 6 days*
Cost (low volume)
$182/binder
Cost (high volume)
$150/binder
Min order size
8 binders
Max order size
96 binders
Additional services
Ship DNA to customer
by order volume, add-on services & more
Workflow MAB002

Expression SystemCHO/293TBinder FormatFull-length AbBinder PurificationProtein A/GAssayBLIImmobilizedTargetGold Standard

Overview
[Expression System]CHO/293T[Binder Format]Full-length Ab[Binder Purification]Protein A/G[Assay]BLI[Immobilized]Target
Sensing format

The binder is expressed as a full-length antibody, affinity-purified, and used as the analyte at a known concentration while the target is immobilized on the probe. A full-length antibody is itself bivalent, so holding it on the probe would measure avidity; putting it in solution against an immobilized target measures the intrinsic affinity of one arm. SDS-PAGE and SEC report purity and oligomeric state. Culture scale -- 1 mL or 30 mL -- is chosen under Protocol customization.

Best for
Intrinsic, monovalent affinity for a full-length antibody
Turnaround
Start from 6.5 days*
Cost (low volume)
$192/binder
Cost (high volume)
$155/binder
Min order size
8 binders
Max order size
96 binders
Additional services
Ship Binder Protein To Customer
SEC Characterization
Ship DNA to customer
by order volume, add-on services & more
Workflow MAB003

Expression SystemCHO/293TBinder FormatFull-length AbBinder PurificationProtein A/GAssayBLIImmobilizedBinder

Overview
[Expression System]CHO/293T[Binder Format]Full-length Ab[Binder Purification]Protein A/G[Assay]BLI[Immobilized]Binder
Sensing format

The binder is expressed as a full-length antibody and affinity-purified on a Protein A/G column. Its concentration is measured on the assay instrument, then it is captured on the probe and titrated against the target in solution. SDS-PAGE and SEC report purity and oligomeric state, and the purified antibody can be shipped to you. Culture scale is chosen under Protocol customization.

Best for
Deep characterization of a full-length antibody from a purified preparation
Turnaround
Start from 6.5 days*
Cost (low volume)
$198/binder
Cost (high volume)
$163/binder
Min order size
8 binders
Max order size
96 binders
Additional services
Ship Binder Protein To Customer
SEC Characterization
Ship DNA to customer
by order volume, add-on services & more
Workflow FAB001

Expression SystemCHO/293TBinder FormatFabBinder PurificationNoneAssayBLIImmobilizedBinder

Overview
[Expression System]CHO/293T[Binder Format]Fab[Binder Purification]None[Assay]BLI[Immobilized]Binder
Sensing format

The binder is expressed as a Fab in mammalian cells and used without purification: the crude supernatant is captured on the probe and titrated against the target in solution. Expression level therefore does not have to be high, or even known. This is the shortest of the mammalian routes and the least expensive per design, because nothing is purified and nothing is shipped. Culture scale is chosen under Protocol customization.

Best for
A first affinity ranking of many Fab designs, at the lowest cost per design
Turnaround
Start from 6 days*
Cost (low volume)
$196/binder
Cost (high volume)
$164/binder
Min order size
8 binders
Max order size
96 binders
Additional services
Ship DNA to customer
by order volume, add-on services & more
Workflow FAB002

Expression SystemCHO/293TBinder FormatFabBinder PurificationStrep-Tactin XTAssayBLIImmobilizedTargetGold Standard

Overview
[Expression System]CHO/293T[Binder Format]Fab[Binder Purification]Strep-Tactin XT[Assay]BLI[Immobilized]Target
Sensing format

The binder is expressed as a Fab, affinity-purified, and used as the analyte at a known concentration while the target is immobilized on the probe. Every binding event is therefore monovalent, and the affinity reported is intrinsic rather than avidity-inflated. SDS-PAGE and SEC report the purity and the oligomeric state of the material that was measured. Culture scale -- 1 mL or 30 mL -- is chosen under Protocol customization.

Best for
Intrinsic, monovalent affinity for a Fab, with purity and oligomeric state reported
Turnaround
Start from 6.5 days*
Cost (low volume)
$192/binder
Cost (high volume)
$155/binder
Min order size
8 binders
Max order size
96 binders
Additional services
Ship Binder Protein To Customer
SEC Characterization
Ship DNA to customer
by order volume, add-on services & more
Workflow FAB003

Expression SystemCHO/293TBinder FormatFabBinder PurificationTwinStrep-HisAssayBLIImmobilizedBinder

Overview
[Expression System]CHO/293T[Binder Format]Fab[Binder Purification]TwinStrep-His[Assay]BLI[Immobilized]Binder
Sensing format

The binder is expressed as a Fab and purified on both of the affinity handles it carries, which removes truncated chains and incompletely assembled material. Its concentration is measured on the assay instrument, then it is captured on the probe and titrated against the target in solution. SDS-PAGE and SEC report purity and oligomeric state, and the purified binder can be shipped to you. Culture scale is chosen under Protocol customization.

Best for
Deep characterization of a Fab from a quality-controlled preparation
Turnaround
Start from 6.5 days*
Cost (low volume)
$220/binder
Cost (high volume)
$182/binder
Min order size
8 binders
Max order size
96 binders
Additional services
Ship Binder Protein To Customer
SEC Characterization
Ship DNA to customer
by order volume, add-on services & more
Workflow CT001

Expression SystemT cellBinder FormatCARAssayT Cell ActivationBlazing Fast!

Overview
[Expression System]T cell[Binder Format]CAR[Assay]T Cell Activation
Sensing format

Binder expressed on T cell surface as a CAR. T cell activation measured on ELISA or ELISPOT.

Best for
CAR-T functional assay
Turnaround
Start from 8 days*
Cost (low volume)
$206/binder
Cost (high volume)
$185/binder
Min order size
16 binders
Max order size
768 binders
Additional services
Cell Killing Assay
Ship DNA to customer
by order volume, add-on services & more
* Assuming optimal conditions, i.e., no additional service is ordered, target is delivered to RootPath on time, no trouble-shooting necessary.

Access and Organize Your Data In User-friendly and AI-accessible Portal

You can batch upload the binder sequences, choose target and experimental parameters (e.g., expression system, number of replicates), and we will take care of the rest. Once your data is ready, you can access your data in our user-friendly portal. To further remove barrier, we open API end points to create projects and view data.

BinderVerse portal screenshot

Cost Estimate

Choose your testing format, scale, and assay details. The price, plate layout, and turnaround update live. Numbers are estimates. Final quote will be issued to you after project submission.

96
1

Every binder is tested against every target. Target preparation scales linearly with target count.

Binders
Targets
Binder × Target Interactions
—
Day 0—
Estimated total
$0
$0 / binder $0 / sensorgram
Binder Prep
$0
Target Prep2
$0
Assay
$0
1 Under optimal conditions: target protein is commercially available and delivered to RootPath on time and with sufficient quality. 2 Target prep cost is an estimate. Actual cost depends on target identity, commercial availability, supplier pricing, and concentration required. RootPath can also produce custom recombinant targets in His-tagged, GST-tagged, Fc-fusion, or other common formats, expressed and purified in-house, turnaround time 4 - 6 weeks.
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